
   25-Oct-2021 15:10:42 +0200

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_RT
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2830 cell sequences
cell traces covers the whole channel: 1507 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 82
write results (1425 cells):
----------
----------
1425 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2940 cell sequences
cell traces covers the whole channel: 1475 cell sequences
load video
{Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader/init', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 611)" style="font-weight:bold">VideoReader/init</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',611,0)">line 611</a>)
Unable to determine the codec required.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 176)" style="font-weight:bold">VideoReader</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',176,0)">line 176</a>)
            obj.init(fileName);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 173)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',173,0)">line 173</a>)
    vr = VideoReader([filedir fileAvi.name]);
} 
diary off

   12-Nov-2021 14:56:36 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_RT
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2830 cell sequences
cell traces covers the whole channel: 1507 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
{Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('set')" style="font-weight:bold">set</a>
Error setting property 'CurrentFigure' of class '<a href="matlab:doc matlab.ui.Root">Root</a>':
The value set for this property must be a valid HG handle.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 226)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',226,0)">line 226</a>)
set(0,'CurrentFigure',3);
} 
opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',226,0)
clear all
close all
diary off

   12-Nov-2021 15:50:17 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_RT
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2830 cell sequences
cell traces covers the whole channel: 1507 cell sequences
load video
{Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader/init', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 611)" style="font-weight:bold">VideoReader/init</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',611,0)">line 611</a>)
The filename specified was not found in the MATLAB path.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 176)" style="font-weight:bold">VideoReader</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',176,0)">line 176</a>)
            obj.init(fileName);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 173)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',173,0)">line 173</a>)
    vr = VideoReader([filedir fileAvi.name]);
} 
diary off

   24-Nov-2021 15:11:02 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_RT
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2830 cell sequences
cell traces covers the whole channel: 1507 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 82
write results (1425 cells):
----------
----------
1425 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2940 cell sequences
cell traces covers the whole channel: 1475 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 106
write results (1369 cells):
----------
----------
1369 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2969 cell sequences
cell traces covers the whole channel: 1428 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 103
write results (1325 cells):
----------
----------
1325 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2790 cell sequences
cell traces covers the whole channel: 1264 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 102
write results (1162 cells):
----------
----------
1162 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2749 cell sequences
cell traces covers the whole channel: 1284 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 69
write results (1215 cells):
----------
----------
1215 cells written
measurement: Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\bat1_8nlps_RT\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2830	1507	1425	1425
2	2940	1475	1369	1369
3	2969	1428	1325	1325
4	2790	1264	1162	1162
5	2749	1284	1215	1215

   4-Mar-2022 14:33:53 +0100

rootdir = ..\211019_Faruq_2wildbats\
sampleName = 211019_Bat1_8nlps_RT
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2830 cell sequences
cell traces covers the whole channel: 1514 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 82
write results (1432 cells):
----------
----------
1432 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2940 cell sequences
cell traces covers the whole channel: 1493 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 107
write results (1386 cells):
----------
----------
1386 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2969 cell sequences
cell traces covers the whole channel: 1440 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 104
write results (1336 cells):
----------
----------
1336 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2790 cell sequences
cell traces covers the whole channel: 1281 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 102
write results (1179 cells):
----------
----------
1179 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2749 cell sequences
cell traces covers the whole channel: 1296 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 70
write results (1226 cells):
----------
----------
1226 cells written
measurement: ..\211019_Faruq_2wildbats\211019_Bat1_8nlps_RT\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2830	1514	1432	1432
2	2940	1493	1386	1386
3	2969	1440	1336	1336
4	2790	1281	1179	1179
5	2749	1296	1226	1226
